I would recommend reaching out to support@rachio.com so that they can take a closer look at your system and determine what is happening to cause the system to think that your zones are saturated. In the meantime you can actually turn saturation skip off of your schedule if they are a Fixed schedule type.
Click on the schedules tab, click on the schedule in question, scroll down to the weather intelligence pane and click on it. From there, you can activate/deactivate saturation skip.