Strange rainbird config

When replacing an old Rain Bird irrigation system. One of the zones (#2 in attached image) had two wires coming in. I assumed that the previous owner of the house who wired up this system was trying to power to zones off of 1, or that one of the wires was bad. So I Associated each of these wires with their own Zone on the rachio. Neither fire up the old Zone number 2. The old zone 5 is also not working. All other zones work fine. Any ideas how to rectify this?

Well, it looks like that sleeve has 3 green wires, is it possible that those greens have been confused?